[1] R. Wohlgemuth, “The locks and keys to industrial biotechnology,” N. Biotechnol., vol. 25, no. 4, pp. 204–213, 2009, doi: 10.1016/j.nbt.2009.01.002. [2] S. Jagadevan et al., “Synthetic biology: overview and applications,” Elsevier, vol. 11, no. 1, pp. 183–197, Jun. 2018, doi: 10.1186/s13068-018-1181-1. [3] I. Sokra, S. Somaly, H. Meta, V. Marady, N. Sokheang, and K. Mey, “Synthetic biology platforms for sustainable bioproduction: Advances, challenges, and industrial prospects,” researchgate.net, vol. 2, no. 1, pp. 198–212, 2026, doi: 10.5281/zenodo.18005176. [4] H. Meta, S. Somaly, I. S.-J. of A. and Technology, and undefined 2026, “Engineering living systems for sustainability: synthetic biology approaches in green bioproduction,” researchgate.net, vol. 2, no. 1, pp. 183–197, 2026, doi: 10.5281/zenodo.17998144. [5] J. D. C. Montoya, D. Hernandez, and J. Velasco, “Synthetic Biology in the Realm of Genome Engineering for Improved Biocatalysts and Production,” Wiley Online Libr., pp. 257–278, Jan. 2026, doi: 10.1002/9781394309955.ch11. [6] I. Sokra, S. Somaly, H. M.-J. of A. and Technology, and undefined 2026, “CRISPR–Cas9–Based genome editing in microbial biotechnology: Advances in metabolic engineering, fermentation systems, and industrial applications,” researchgate.net, vol. 2, no. 1, pp. 379–387, 2026, doi: 10.1007/978-981-95-6970- 0_20. [7] F. Masotti, V. Senatore, I. Serra, … P. B.-12th C. on, and undefined 2025, “Teaching Synthetic Biology for Recombinant Protein Production: development of laboratory course for MSc students in Industrial Biotechnology,” boa.unimib.it, 2025, doi: 10.1039/d5ya00118h. [8] V. Chubukov, A. Mukhopadhyay, C. J. Petzold, J. D. Keasling, and H. G. Martín, “Biotechnology systems engineering: preparing the next generation of bioengineers,” frontiersin.org, vol. 5, 2025, doi: 10.3389/fsysb.2025.1583534. [9] N. B. Devi, G. Pugazhenthi, and K. Pakshirajan, “Synthetic biology approaches and bioseparations in syngas fermentation,” Trends Biotechnol., vol. 43, no. 1, pp. 111–130, 2025, doi: 10.1016/j.tibtech.2024.07.008. [10] K. Isoko, J. Cordiner, Z. Kis, P. M.-D. Discovery, and undefined 2024, “Bioprocessing 4.0: a pragmatic review and future perspectives,” pubs.rsc.org, 2024, doi: 10.1039/d4dd00127c. [11] H. Gurawalia, P. B. Shinde, and K. K. Sharma, “Embracing Industry 4.0 Ingredients in Synthetic Biology for the Development of Carbon–Neutral Economy,” Springer, vol. Part F2511, pp. 215–252, 2024, doi: 10.1007/978-3-031-51601-6_8. [12] B. R. Kiran, M. N. V. Prasad, and S. V. Mohan, “Synthetic biology: An emerging field for developing economies,” Bioremediation Bioeconomy a Circ. Econ. Approach, Second Ed., pp. 767–787, 2023, doi: 10.1016/B978-0-443-16120-9.00013-3. [13] J. W. Ye, Y. N. Lin, X. Q. Yi, Z. X. Yu, X. Liu, and G. Q. Chen, “Synthetic biology of extremophiles: a new wave of biomanufacturing,” Trends Biotechnol., vol. 41, no. 3, pp. 342–357, 2023, doi: 10.1016/j.tibtech.2022.11.010. [14] B. G. Ergün, K. Laçın, B. Çaloğlu, and B. Binay, “Second generation Pichia pastoris strain and bioprocess designs,” Springer, vol. 15, no. 1, Dec. 2022, doi: 10.1186/s13068-022-02234-7. [15] C. Dellomonaco, F. Fava, R. G.-M. cell factories, and undefined 2010, “The path to next generation biofuels: successes and challenges in the era of synthetic biology,” Springer, vol. 9, no. 1, Dec. 2010, doi: 10.1186/1475-2859-9-3. [16] D. Jullesson, F. David, B. Pfleger, and J. Nielsen, “Impact of synthetic biology and metabolic engineering on industrial production of fine chemicals,” Biotechnol. Adv., vol. 33, no. 7, pp. 1395–1402, 2015, doi: 10.1016/j.biotechadv.2015.02.011. [17] E. Fesenko and R. Edwards, “Plant synthetic biology: A new platform for industrial biotechnology,” J. Exp. Bot., vol. 65, no. 8, pp. 1927–1937, 2014, doi: 10.1093/jxb/eru070. [18] C. Zhang, C. Ottenheim, M. Weingarten, and L. H. Ji, “Microbial utilization of next- generation feedstocks for the biomanufacturing of value-added chemicals and food ingredients,” frontiersin.org, vol. 10, Apr. 2022, doi: 10.3389/fbioe.2022.874612. [19] M. V. Ortega, “Engineering microbes for consolidated bioprocessing: new approaches in the light of synthetic biology,” 2021, Accessed: Mar. 26, 2026. [Online]. Available:
https://era.ed.ac.uk/handle/1842/38496 [20] C. Katsimpouras and G. Stephanopoulos, “Enzymes in biotechnology: Critical platform technologies for bioprocess development,” Curr. Opin. Biotechnol., vol. 69, pp. 91–102, 2021, doi: 10.1016/j.copbio.2020.12.003. [21] L. Clarke and R. Kitney, “Developing synthetic biology for industrial biotechnology applications,” Biochem. Soc. Trans., vol. 48, no. 1, pp. 113–122, 2020, doi: 10.1042/BST20190349. [22] P. S. Freemont, “Synthetic biology industry: Data-driven design is creating new opportunities in biotechnology,” Emerg. Top. Life Sci., vol. 3, no. 5, pp. 651–657, 2019, doi: 10.1042/ETLS20190040. [23] P. S. Freemont, “Meeting the challenges of industrial biotechnology in the age of synthetic biology,” 2015, doi: 10.1042/ETLS20190040. [24] M. Heinemann and S. Panke, “Synthetic biology - Putting engineering into biology,” Bioinformatics, vol. 22, no. 22, pp. 2790–2799, 2006, doi: 10.1093/bioinformatics/btl469. [25] N. S. McCarty and R. Ledesma-Amaro, “Synthetic Biology Tools to Engineer Microbial Communities for Biotechnology,” Trends Biotechnol., vol. 37, no. 2, pp. 181–197, 2019, doi: 10.1016/j.tibtech.2018.11.002. [26] J. Czajka, Q. Wang, Y. Wang, and Y. J. Tang, “Synthetic biology for manufacturing chemicals: constraints drive the use of non-conventional microbial platforms,” Springer, vol. 101, no. 20, pp. 7427–7434, Oct. 2017, doi: 10.1007/s00253-017-8489- 9. [27] V. Chubukov, A. Mukhopadhyay, C. J. Petzold, J. D. Keasling, and H. G. Martín, “Synthetic and systems biology for microbial production of commodity chemicals,” nature.com, vol. 2, 2016, doi: 10.1038/npjsba.2016.9. [28] C. A. Rabinovitch-Deere, J. W. K. Oliver, G. M. Rodriguez, and S. Atsumi, “Synthetic biology and metabolic engineering approaches to produce biofuels,” ACS Publ., vol. 113, no. 7, pp. 4611–4632, Jul. 2013, doi: 10.1021/cr300361t. [29] T. K. Lu, A. S. Khalil, and J. J. Collins, “Next-generation synthetic gene networks,” Nat. Biotechnol., vol. 27, no. 12, pp. 1139–1150, 2009, doi: 10.1038/nbt.1591. [30] R. S. K. Walker and I. S. Pretorius, “Applications of yeast synthetic biology geared towards the production of biopharmaceuticals,” Genes (Basel)., vol. 9, no. 7, 2018, doi: 10.3390/genes9070340. [31] L. Zhu, Y. Zhu, Y. Zhang, and Y. Li, “Engineering the robustness of industrial microbes through synthetic biology,” Trends Microbiol., vol. 20, no. 2, pp. 94–101, 2012, doi: 10.1016/j.tim.2011.12.003. [32] E. Fletcher, A. Krivoruchko, and J. Nielsen, “Industrial systems biology and its impact on synthetic biology of yeast cell factories,” Wiley Online Libr., vol. 113, no. 6, pp. 1164–1170, Jun. 2016, doi: 10.1002/bit.25870. [33] A. Straathof, S. Wahl, K. Benjamin, R. T.-… in biotechnology, and undefined 2019, “Grand research challenges for sustainable industrial biotechnology,” cell.com, vol. 14, no. 9, Sep. 2019, doi: 10.1002/biot.201800437. [34] W. Tang, H. Z.-B. J. H. Nutrition, and undefined 2009, “Industrial biotechnology: tools and applications,” Wiley Online Libr., vol. 4, no. 12, pp. 1725–1739, Dec. 2009, doi: 10.1002/biot.200900127. [35] M. Koutinas, A. Kiparissides, … E. P.-… structural biotechnology, and undefined 2012, “Bioprocess systems engineering: transferring traditional process engineering principles to industrial biotechnology,” Elsevier, vol. 87, no. 4, pp. 445–450, Apr. 2012, doi: 10.1002/jctb.3711. [36] W. Sabra, D. Dietz, D. Tjahjasari, and A. P. Zeng, “Biosystems analysis and engineering of microbial consortia for industrial biotechnology,” Wiley Online Libr., vol. 10, no. 5, pp. 407–421, Oct. 2010, doi: 10.1002/elsc.201000111. [37] A. A. Kiss, J. Grievink, and M. Rito-Palomares, “A systems engineering perspective on process integration in industrial biotechnology,” Wiley Online Libr., vol. 90, no. 3, pp. 349–355, Mar. 2015, doi: 10.1002/jctb.4584. [38] S. R.-E. in L. Sciences and undefined 2013, “Next‐generation bioproduction systems: Cell‐free conversion concepts for industrial biotechnology,” Wiley Online Libr., vol. 13, no. 1, pp. 19–25, Jan. 2013, doi: 10.1002/elsc.201100237. [39] K. Campbell, J. Xia, and J. Nielsen, “The Impact of Systems Biology on Bioprocessing,” Trends Biotechnol., vol. 35, no. 12, pp. 1156–1168, 2017, doi: 10.1016/j.tibtech.2017.08.011. [40] J. Otero, J. N.-B. and bioengineering, and undefined 2010, “Industrial systems biology,” Wiley Online Libr., vol. 105, no. 3, pp. 439–460, Feb. 2010, doi: 10.1002/bit.22592. [41] J. M. Clomburg, A. M. Crumbley, and R. Gonzalez, “Industrial biomanufacturing: the future of chemical production,” science.org, vol. 355, no. 6320, Jan. 2017, doi: 10.1126/science.aag0804. [42] J. H. Park, S. Y. Lee, T. Y. Kim, and H. U. Kim, “Application of systems biology for bioprocess development,” Trends Biotechnol., vol. 26, no. 8, pp. 404–412, 2008, doi: 10.1016/j.tibtech.2008.05.001.