BAYESIAN ANALYSIS OF BIRD OVOMUCOID: INFERRING EVOLUTIONARY DYNAMICS AND PHYLOGENETIC RELATIONSHIPS.

Rachana Krishnamurthy

BAYESIAN ANALYSIS OF BIRD OVOMUCOID: INFERRING EVOLUTIONARY DYNAMICS AND PHYLOGENETIC RELATIONSHIPS.

Rachana Krishnamurthy | International Journal of Animal Biotechnology and Applications | Vol 10, Issue 1 | pp. 1-10 | ISSN: 2455-7315

Abstract

Objective: Ovomucoid is a serine protease inhibitor discovered in bird eggs that not only protects embryos but also has phylogenetic significance due to its potential usage as a molecular marker. They are glycoproteins that have antibacterial efficacy because they inhibit bacterial proteolytic enzymes that are essential for microbiological development. This study makes use of DNA sequence data to rebuild evolutionary connections among bird species.

Methods: Over the past decade, the incorporation of cutting-edge Bayesian analytic methods has resulted in substantial advances in the study of Phylogeny. Here, we successfully explore parameter space by integrating sophisticated Bayesian techniques, predicting divergence durations, branch lengths, and substitution rates using the software tools- BEAUti, BEAST, TreeAnnotator, Tracer, and FigTree. In general, this research demonstrates the effectiveness of Bayesian analytic methods in unraveling the rich evolutionary thread woven by bird ovomucoid. The resulting Bayesian phylogenetic tree sheds light on the evolutionary processes of bird ovomucoid over several avian families.

Results:The use of Bayesian methods along with Phylogenetic evaluation provides insights into the evolutionary connections of the seventeen bird ovomucoids. Using probabilistic statistical models could shed light on the genetic basis and hence the string that links the many avian species. The Bayesian analysis also facilitated this study by yielding information about branch lengths, and substitution rates, and hence put forth a clearer picture of evolution based on bird ovomucoid.

Conclusion:These findings help to deepen our understanding of bird ovomucoid evolution and lay the groundwork for future avian genetics and evolutionary biology study. Thus, the findings give a framework for addressing pressing questions and advancing research in the field of molecular evolution.

Keywords: Ovomucoid, Bayesian, Phylogenetic analysis, BEAUti, BEAST, FigTree, Tracer,
Molecular evolution

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References

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Bioinformatics; Oxford University Press. https://doi.org/10.1093/bib/bbn017

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parumapertus (Acari: Ixodidae) from Two Locations Within Its Geographical Range. Journal of Medical Entomology; Oxford University Press. https://doi.org/10.1093/jme/tjz042

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How to cite this article

APA

Krishnamurthy, R. (2024). BAYESIAN ANALYSIS OF BIRD OVOMUCOID: INFERRING EVOLUTIONARY DYNAMICS AND PHYLOGENETIC RELATIONSHIPS.. International Journal of Animal Biotechnology and Applications, 10(1), 1-10.

MLA

Krishnamurthy, Rachana. “BAYESIAN ANALYSIS OF BIRD OVOMUCOID: INFERRING EVOLUTIONARY DYNAMICS AND PHYLOGENETIC RELATIONSHIPS..” International Journal of Animal Biotechnology and Applications, vol. 10, no. 1, 2024, pp. 1-10.

Chicago

Rachana Krishnamurthy. “BAYESIAN ANALYSIS OF BIRD OVOMUCOID: INFERRING EVOLUTIONARY DYNAMICS AND PHYLOGENETIC RELATIONSHIPS..” International Journal of Animal Biotechnology and Applications 10, no. 1 (2024): 1-10.

Vancouver

Krishnamurthy R. BAYESIAN ANALYSIS OF BIRD OVOMUCOID: INFERRING EVOLUTIONARY DYNAMICS AND PHYLOGENETIC RELATIONSHIPS.. International Journal of Animal Biotechnology and Applications. 2024;10(1):1-10.

BibTeX

@article{KrishnamurthyR2024,
author = {Rachana Krishnamurthy},
title = {BAYESIAN ANALYSIS OF BIRD OVOMUCOID: INFERRING EVOLUTIONARY DYNAMICS AND PHYLOGENETIC RELATIONSHIPS.},
journal = {International Journal of Animal Biotechnology and Applications},
year = {2024},
volume = {10},
number = {1},
pages = {1--10},
issn = {2455-7315},
url = {https://journalspub.com/publication/uncategorized/article=11155}
}

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Rachana Krishnamurthy | International Journal of Animal Biotechnology and Applications | Vol 10, Issue 1 | pp. 1-10 | ISSN: 2455-7315

Abstract

Keywords: Ovomucoid, Bayesian, Phylogenetic analysis, BEAUti, BEAST, FigTree, Tracer,
Molecular evolution

🔒 This is a subscription article

Full text is available to subscribers and institutional members. Please choose an option below to access it.

Subscribe Purchase this article Institutional / Login access

References

[2] Furlong, & Holland. (n.d.). https://bioone.org/jBayesian-Phylogenetic-Analysis-Supports- Monophyly-of-Ambulacraria-and-of-Cyclostomes. BioOne Digital Library, 19(5).

[5] Drummond, A. J., & Rambaut, A. (2007). BEAST: Bayesian evolutionary analysis by sampling trees. BMC Evolutionary Biology, 7(1), 214. https://doi.org/10.1186/1471-2148-7-214

[9] Bouckaert, Remco, et al. "Estimating Species Trees from Multilocus Data." (2012, Oct 12).Estimating Species Trees from Multilocus Data.

[13] Osozawa, S., & Wakabayashi, J. (Year). Cicada timetree by BEAST v1.X verified the recently

and exponentially increasing base substitution rates. Title of the Journal or Preprint Server, Version number. https://doi.org/10.1101/2020.12.03.409599

[15] Hill, V., & Baele, G. (2019, July 31). Bayesian Estimation of Past Population Dynamics in

BEAST 1.10 Using the Skygrid Coalescent Model. Molecular Biology and Evolution; Oxford

University Press. https://doi.org/10.1093/molbev/msz172

[16] Baele, G., Ayres, D. L., Rambaut, A., Suchard, M. A., & Lemey, P. (2019, January 1). High-

Performance Computing in Bayesian Phylogenetics and Phylodynamics Using BEAGLE. Springer

eBooks. https://doi.org/10.1007/978-1-4939-9074-0_23

[18] Springer, M. S., Murphy, W. J., & Roca, A. L. (2018, April 1). Appropriate fossil calibrations and tree constraints uphold the Mesozoic divergence of solenodons from other extant mammals.

Molecular Phylogenetics and Evolution; Elsevier BV. https://doi.org/10.1016/j.ympev.2018.01.007

[19] Kumar, S., Nei, M., Dudley, J. T., & Tamura, K. (2008, March 27). MEGA: A biologist- centric software for evolutionary analysis of DNA and protein sequences. Briefings in

Bioinformatics; Oxford University Press. https://doi.org/10.1093/bib/bbn017

[21] Abeyrathne, E., Lee, H. Y., Jo, C., Suh, J. W., & Ahn, D. U. (2015, September 1). Enzymatic hydrolysis of ovomucoid and the functional properties of its hydrolysates. Poultry Science; Oxford

University Press. https://doi.org/10.3382/ps/pev196

[22] Building phylogenetic trees from molecular data with MEGA - PubMed. (2013, May 1). PubMed. https://doi.org/10.1093/molbev/mst012

[23] OVOMUCOID | Bioseutica®. (n.d.). OVOMUCOID | Bioseutica®.

https://www.bioseutica.com/products/ovomucoid#:~:text=Comprising%2011%25%20of%20the

%20egg,in%20a%201%3A1%20ratio.

[24] Portugal, J. S., Allerdice, M. E. J., Moraru, G. M., King, J. W. B., Paddock, C. D., Becker, T., Smith, T. C., & Goddard, J. (2019, April 5). Molecular Phylogeny of Dermacentor

parumapertus (Acari: Ixodidae) from Two Locations Within Its Geographical Range. Journal of Medical Entomology; Oxford University Press. https://doi.org/10.1093/jme/tjz042

[25] Suchard, Lemey, Baele, Ayres, Drummond, & Rambaut. (n.d.). Bayesian phylogenetic and phylodynamic data integration using BEAST 1.10. Virus Evolution, 4(1).

How to cite this article

APA

MLA

Chicago

Vancouver

Krishnamurthy R. BAYESIAN ANALYSIS OF BIRD OVOMUCOID: INFERRING EVOLUTIONARY DYNAMICS AND PHYLOGENETIC RELATIONSHIPS.. International Journal of Animal Biotechnology and Applications. 2024;10(1):1-10.

BibTeX

@article{KrishnamurthyR2024,
author = {Rachana Krishnamurthy},
title = {BAYESIAN ANALYSIS OF BIRD OVOMUCOID: INFERRING EVOLUTIONARY DYNAMICS AND PHYLOGENETIC RELATIONSHIPS.},
journal = {International Journal of Animal Biotechnology and Applications},
year = {2024},
volume = {10},
number = {1},
pages = {1--10},
issn = {2455-7315},
url = {https://journalspub.com/publication/uncategorized/article=11155}
}

Rachana Krishnamurthy | International Journal of Animal Biotechnology and Applications | Vol 10, Issue 1 | pp. 1-10 | ISSN: 2455-7315

Abstract

Keywords: Ovomucoid, Bayesian, Phylogenetic analysis, BEAUti, BEAST, FigTree, Tracer,
Molecular evolution

🔒 This is a subscription article

Full text is available to subscribers and institutional members. Please choose an option below to access it.

Subscribe Purchase this article Institutional / Login access

References

[2] Furlong, & Holland. (n.d.). https://bioone.org/jBayesian-Phylogenetic-Analysis-Supports- Monophyly-of-Ambulacraria-and-of-Cyclostomes. BioOne Digital Library, 19(5).

[5] Drummond, A. J., & Rambaut, A. (2007). BEAST: Bayesian evolutionary analysis by sampling trees. BMC Evolutionary Biology, 7(1), 214. https://doi.org/10.1186/1471-2148-7-214

[9] Bouckaert, Remco, et al. "Estimating Species Trees from Multilocus Data." (2012, Oct 12).Estimating Species Trees from Multilocus Data.

[13] Osozawa, S., & Wakabayashi, J. (Year). Cicada timetree by BEAST v1.X verified the recently

and exponentially increasing base substitution rates. Title of the Journal or Preprint Server, Version number. https://doi.org/10.1101/2020.12.03.409599

[15] Hill, V., & Baele, G. (2019, July 31). Bayesian Estimation of Past Population Dynamics in

BEAST 1.10 Using the Skygrid Coalescent Model. Molecular Biology and Evolution; Oxford

University Press. https://doi.org/10.1093/molbev/msz172

[16] Baele, G., Ayres, D. L., Rambaut, A., Suchard, M. A., & Lemey, P. (2019, January 1). High-

Performance Computing in Bayesian Phylogenetics and Phylodynamics Using BEAGLE. Springer

eBooks. https://doi.org/10.1007/978-1-4939-9074-0_23

[18] Springer, M. S., Murphy, W. J., & Roca, A. L. (2018, April 1). Appropriate fossil calibrations and tree constraints uphold the Mesozoic divergence of solenodons from other extant mammals.

Molecular Phylogenetics and Evolution; Elsevier BV. https://doi.org/10.1016/j.ympev.2018.01.007

[19] Kumar, S., Nei, M., Dudley, J. T., & Tamura, K. (2008, March 27). MEGA: A biologist- centric software for evolutionary analysis of DNA and protein sequences. Briefings in

Bioinformatics; Oxford University Press. https://doi.org/10.1093/bib/bbn017

[21] Abeyrathne, E., Lee, H. Y., Jo, C., Suh, J. W., & Ahn, D. U. (2015, September 1). Enzymatic hydrolysis of ovomucoid and the functional properties of its hydrolysates. Poultry Science; Oxford

University Press. https://doi.org/10.3382/ps/pev196

[22] Building phylogenetic trees from molecular data with MEGA - PubMed. (2013, May 1). PubMed. https://doi.org/10.1093/molbev/mst012

[23] OVOMUCOID | Bioseutica®. (n.d.). OVOMUCOID | Bioseutica®.

https://www.bioseutica.com/products/ovomucoid#:~:text=Comprising%2011%25%20of%20the

%20egg,in%20a%201%3A1%20ratio.

[24] Portugal, J. S., Allerdice, M. E. J., Moraru, G. M., King, J. W. B., Paddock, C. D., Becker, T., Smith, T. C., & Goddard, J. (2019, April 5). Molecular Phylogeny of Dermacentor

parumapertus (Acari: Ixodidae) from Two Locations Within Its Geographical Range. Journal of Medical Entomology; Oxford University Press. https://doi.org/10.1093/jme/tjz042

[25] Suchard, Lemey, Baele, Ayres, Drummond, & Rambaut. (n.d.). Bayesian phylogenetic and phylodynamic data integration using BEAST 1.10. Virus Evolution, 4(1).

How to cite this article

APA

MLA

Chicago

Vancouver

Krishnamurthy R. BAYESIAN ANALYSIS OF BIRD OVOMUCOID: INFERRING EVOLUTIONARY DYNAMICS AND PHYLOGENETIC RELATIONSHIPS.. International Journal of Animal Biotechnology and Applications. 2024;10(1):1-10.

BibTeX

@article{KrishnamurthyR2024,
author = {Rachana Krishnamurthy},
title = {BAYESIAN ANALYSIS OF BIRD OVOMUCOID: INFERRING EVOLUTIONARY DYNAMICS AND PHYLOGENETIC RELATIONSHIPS.},
journal = {International Journal of Animal Biotechnology and Applications},
year = {2024},
volume = {10},
number = {1},
pages = {1--10},
issn = {2455-7315},
url = {https://journalspub.com/publication/uncategorized/article=11155}
}

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